Shine-Dalgarno sequence

RBS rbs

Feature Information

Note
full consensus sequence for ribosome-binding sites upstream of start codons in E. coli; complementary to a region in the 3' end of the 16S rRNA (Chen et al., 1994)
Type
RBS
Category
rbs

Found in 356 Plasmids (showing 251–300)

Plasmid Species Position Strand
pREC1010lac-Eco2 240692 Synthetic 7730..7739 Fwd
pREC1010lac-Ban1 240693 Synthetic 1867..1876 Fwd
pREC1010lac-Eas1 240696 Synthetic 1794..1803 Fwd
pREC1010lac-Csp1 240697 Synthetic 7732..7741 Fwd
pREC1010lac-Tsp1 240698 Synthetic 700..709 Fwd
pREC1010lac-Ebu1 240699 Synthetic 1469..1478 Fwd
pREC1010lac-Hcl1 240700 Synthetic 8809..8818 Fwd
pREC1010-opEas1 240701 Synthetic 0..10085 Fwd
pREC1010-opEbu1 240702 Synthetic 0..10125 Fwd
pRECBRR1-Kva1 240703 Synthetic 1099..1108 Fwd
pFA6a-Pho8d∆60-TRP1 240968 Saccharomyces cerevisiae 2726..2735 Fwd
pUPD3_RBS_RBS2 243990 Synthetic 20..29 Fwd
pUPD3_RBS_RBS3 243991 Synthetic 19..28 Fwd
pUPD3_RBS_RBS4 243992 Synthetic 17..26 Fwd
pMAPLe4 PCMTD1(1-231) 246498 Homo sapiens 2071..2080 Fwd
pMAPLe4 PCMTD1 246503 Homo sapiens 2071..2080 Fwd
pMAPLe4 PCMTD1 F57 F217 F220 246505 Homo sapiens 4769..4778 Fwd
pMAPLe4 PCMTD1 T62 H67 M68 246506 Homo sapiens 4769..4778 Fwd
pMAPLe4 PCMTD1 PCMTD1(∆ESB-ASB9) 246507 Homo sapiens 4544..4553 Fwd
pTW368z 246581 Arabidopsis thaliana 5516..5525 Fwd
pTW411a 246582 Arabidopsis thaliana 5828..5837 Fwd
pTW411c 246584 Arabidopsis thaliana 5822..5831 Fwd
pTW411d 246585 Arabidopsis thaliana 5819..5828 Fwd
pTW334e2 246586 Arabidopsis thaliana 5514..5523 Fwd
pTW334e2b 246587 Arabidopsis thaliana 5795..5804 Fwd
pTW334e3 246588 Arabidopsis thaliana 5338..5347 Fwd
pTW334e4 246589 Arabidopsis thaliana 5251..5260 Fwd
p3360_KanR_2p 247302 Arabidopsis thaliana 5631..5640 Fwd
p3382_KanR_7p 247308 Arabidopsis thaliana 4943..4952 Fwd
p3386_KanR_7p 247309 Arabidopsis thaliana 3369..3378 Fwd
p3387_KanR_4p 247310 Arabidopsis thaliana 3704..3713 Fwd
pB06_3360_6p 247311 Arabidopsis thaliana 9258..9267 Fwd
pEW008 248191 Synthetic 3359..3368 Fwd
(P2)RBSB 251373 Synthetic 359..368 Fwd
(P4)RBSB 251383 Synthetic 359..368 Fwd
(P6)RBSB 251393 Synthetic 344..353 Fwd
MAP1LC3A 25185 Homo sapiens 139..148 Fwd
Delta6 253337 Synthetic 1545..1554 Fwd
ARL6 25524 Homo sapiens 521..530 Fwd
pQStrep2-CRYM 31293 Homo sapiens 674..683 Fwd
pQTEV-C6orf60 34813 Homo sapiens 336..345 Fwd
pQTEV-MAP1LC3A 34824 Homo sapiens 270..279 Fwd
HA-mDyn1 pcDNA3 36263 Mus musculus 704..713 Fwd
HDHD2 39011 Homo sapiens 743..752 Fwd
pET-His6-ERK2-MEK1_R4F_coexpression 39212 Homo sapiens 1199..1208 Fwd
Tol2-zTRAP 42236 Danio rerio 74..83 Fwd
Tol2-ftyrp>TRAP 42299 Danio rerio 74..83 Fwd
pT3TS-nCas9n 46757 Synthetic 4159..4168 Fwd
pFAB3906 47809 Synthetic 453..462 Fwd
pREDTKI 51628 Saccharomyces cerevisiae 1216..1225 Fwd

DNA Sequence Variants

Sequence context may differ across plasmids due to position and neighboring features.

DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT