Shine-Dalgarno sequence

Feature Information

Note

full consensus sequence for ribosome-binding sites upstream of start codons in E. coli; complementary to a region in the 3' end of the 16S rRNA (Chen et al., 1994)

Type

RBS

Found in 356 Plasmids (showing 351–356)

Plasmid	Species	Position	Strand
pD454-SR mouse Alpha-synuclein 89075	Mus musculus	4419..4428	Fwd
pSI-check2-Cul1b-3'UTR 97153	Danio rerio	1812..1821	Fwd
pSI-check2-Traf6-3'UTR 97154	Danio rerio	7102..7111	Fwd
pSI-check2-Tab1-3'UTR 97155	Danio rerio	5525..5534	Fwd
pSi-check2-zRac2 3'UTR 97158	Danio rerio	4535..4544	Fwd
pSi-check2-zRac2 - mut 3'UTR 97159	Danio rerio	4540..4549	Fwd

DNA Sequence Variants

Sequence context may differ across plasmids due to position and neighboring features.

pD454-SR mouse Alpha-synuclein 89075

4419..4428 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT

pSI-check2-Cul1b-3'UTR 97153

1812..1821 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT

pSI-check2-Traf6-3'UTR 97154

7102..7111 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT

pSI-check2-Tab1-3'UTR 97155

5525..5534 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT

pSi-check2-zRac2 3'UTR 97158

4535..4544 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT

pSi-check2-zRac2 - mut 3'UTR 97159

4540..4549 (Fwd)

DNA Sequence (9 bp)

TAAGGAGGT