Shine-Dalgarno sequence

RBS rbs

Feature Information

Note
full consensus sequence for ribosome-binding sites upstream of start codons in E. coli; complementary to a region in the 3' end of the 16S rRNA (Chen et al., 1994)
Type
RBS
Category
rbs

Found in 356 Plasmids (showing 1–50)

Plasmid Species Position Strand
pETDuet_huCAD_ICADL (TevS) 100098 Homo sapiens 1344..1353 Fwd
MBP-CHC(1-1074)-His6 100748 Homo sapiens 5798..5807 Fwd
pHC01 106900 Synthetic 2270..2279 Fwd
pME-cas9-2A-mCherry 107592 Danio rerio 4770..4779 Fwd
p15aC-GFP 107862 Synthetic 363..372 Fwd
p15aC-1D-5 107865 Homo sapiens 1294..1303 Fwd
p15aC-1D-5 107865 Homo sapiens 2030..2039 Fwd
p15aC-4D1D-5 107866 Homo sapiens 364..373 Fwd
p15aC-4D1D-5 107866 Homo sapiens 3932..3941 Fwd
p15aC-4D1D-5 107866 Homo sapiens 4668..4677 Fwd
pScI_dCas9-CDA 108549 Synthetic 7226..7235 Fwd
pScI_dCas9-CDA_J23119-sgRNA 108550 Synthetic 7226..7235 Fwd
pScI_dCas9-CDA-UL 108551 Synthetic 7429..7438 Fwd
pTol2-hsp70l:Cas9-t2A-GFP, 5xU6:sgRNA 108871 Danio rerio 6802..6811 Fwd
pGC4780 113408 Synthetic 2325..2334 Fwd
pTn7xKS-sfGFP 117394 Synthetic 4992..5001 Fwd
pTn7xKS-dTomato 117395 Synthetic 4980..4989 Fwd
pTn7xKS-mPlum 117396 Synthetic 5151..5160 Fwd
MiniCoopR U6:gRNA p53, mitfa:Cas9 118841 Danio rerio 8351..8360 Fwd
MiniCoopR U6:gRNA cdkn2a, mitfa:Cas9 118842 Danio rerio 8351..8360 Fwd
MiniCoopR U6:gRNA spred1, mitfa:Cas9 118843 Danio rerio 8351..8360 Fwd
MiniCoopR 2xU6:gRNA pten, mitfa:Cas9 118845 Danio rerio 8821..8830 Fwd
MiniCoopR mitfa:KIT L576P 118848 Danio rerio 4829..4838 Fwd
p15aC-3D1D-5 121050 Homo sapiens 1024..1033 Fwd
p15aC-3D1D-5 121050 Homo sapiens 5345..5354 Fwd
p15aC-3D1D-5 121050 Homo sapiens 6081..6090 Fwd
dre-cdk2 3'UTR sicheck2 199 mut 121122 Danio rerio 4076..4085 Fwd
dre-cdk2 3'UTR sicheck2 121123 Danio rerio 4028..4037 Fwd
hsa-cdk2 3'UTR sicheck2 mut 121124 Homo sapiens 4620..4629 Fwd
hsa-cdk2 3'UTR sicheck2 121125 Homo sapiens 4561..4570 Fwd
pSEVA228-pro4IUPi 122018 Arabidopsis thaliana 1142..1151 Fwd
pSEVA228-pro4IUPi 122018 Arabidopsis thaliana 2157..2166 Fwd
pSEVA228-pro4IUPi 122018 Arabidopsis thaliana 6447..6456 Fwd
pTET-IUPi 122019 Arabidopsis thaliana 3931..3940 Fwd
pTET-IUPi 122019 Arabidopsis thaliana 4946..4955 Fwd
pGHUC w-ERBIN (2-hybrid prey plasmid) 128163 Synthetic 4038..4047 Fwd
pGHUC w-ERBIN (2-hybrid prey plasmid) 128163 Synthetic 6193..6202 Fwd
K560GFP 129761 Drosophila melanogaster 4631..4640 Fwd
K980 129762 Drosophila melanogaster 1541..1550 Fwd
KRigor980 129763 Drosophila melanogaster 1511..1520 Fwd
K560_AviC_coBirA 129765 Drosophila melanogaster 1541..1550 Fwd
K560_AviN_coBirA 129766 Drosophila melanogaster 1642..1651 Fwd
K560GFP_17NL 129767 Drosophila melanogaster 1581..1590 Fwd
KIF3A560GFP 129769 Mus musculus 1564..1573 Fwd
Unc104_K560GFP 129773 Caenorhabditis elegans 1575..1584 Fwd
pst39-NST-clone14 133421 Saccharomyces cerevisiae 1765..1774 Fwd
pSHDY*in_PpetE:BCD2:mVenus 133970 Synthetic 2802..2811 Fwd
pGEX2T AtFC1 136363 Arabidopsis thaliana 1499..1508 Fwd
pJBL7010 136942 Synthetic 126..135 Fwd
pET_RTX(exo-)-6xHis 145028 Synthetic 3008..3017 Fwd

DNA Sequence Variants

Sequence context may differ across plasmids due to position and neighboring features.

DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT