Shine-Dalgarno sequence

RBS rbs

Feature Information

Note
full consensus sequence for ribosome-binding sites upstream of start codons in E. coli; complementary to a region in the 3' end of the 16S rRNA (Chen et al., 1994)
Type
RBS
Category
rbs

Found in 356 Plasmids (showing 51–100)

Plasmid Species Position Strand
pET_RTX-6xHis 145029 Synthetic 3054..3063 Fwd
pCRII-TOPO-DrUPF1_F 146281 Danio rerio 696..705 Fwd
pnYC-NpM-HsRoquin1_510-1133_AE 148632 Homo sapiens 4323..4332 Fwd
Prham-M.PstI-p15A-aadA 149340 Synthetic 278..287 Fwd
Prham-M.AvaIII-p15A-aadA 149342 Synthetic 5..14 Fwd
pRibo-Tt 154124 Synthetic 4774..4783 Fwd
pRBS wt 154126 Synthetic 5325..5334 Fwd
pAM552 154131 Synthetic 3972..3981 Fwd
pDH42(CUG/A) 154132 Synthetic 2342..2351 Fwd
pJK422 155373 Synthetic 8822..8831 Fwd
pJK423 155374 Synthetic 8802..8811 Fwd
pJK434 155378 Synthetic 9760..9769 Fwd
pJK528 155388 Synthetic 8541..8550 Fwd
pD451-pA-APEX2 157863 Synthetic 1964..1973 Fwd
pTol2 hsp70l loxP-DsRed-loxP-nCas9n-GFP 158962 Danio rerio 9807..9816 Fwd
pTol2 hsp70l loxP-Non-FP-loxP-nCas9n-GFP 158963 Danio rerio 9660..9669 Fwd
pUR-sap1+ 15984 Schizosaccharomyces pombe 627..636 Fwd
pQE-(NSP12)-pcI-ts,ind+-(NSP7-NSP8) 160540 Synthetic 1015..1024 Fwd
pIFEX-A2aGH 160542 Homo sapiens 4565..4574 Fwd
pEFEX1-A2aGH 160543 Homo sapiens 1445..1454 Fwd
pEFEX2-A2aGH 160544 Homo sapiens 2066..2075 Fwd
pEFEX3-A2aGH 160545 Homo sapiens 2108..2117 Fwd
pCFEX1-A2aGH 160546 Homo sapiens 6199..6208 Fwd
pCFEX2-A2aGH 160547 Homo sapiens 2011..2020 Fwd
pCFEX3-A2aGH 160548 Homo sapiens 2051..2060 Fwd
pcI-ts,ind+-(NSP8) 160656 Synthetic 4071..4080 Fwd
pET-NtLAtC60αβC20 160873 Arabidopsis thaliana 8625..8634 Fwd
pET-AtC60αβC20NtL 160876 Arabidopsis thaliana 7435..7444 Fwd
pJH625_pJH_LldR_PlldR-sfGFP.0TAG 163724 Synthetic 3484..3493 Fwd
pJH626_pJH_LldR_PlldR-sfGFP.1TAG 163725 Synthetic 3484..3493 Fwd
pJH627_pJH_LldR_PlldR-sfGFP.2TAG 163726 Synthetic 3484..3493 Fwd
pJH628_pJH_LldR_PlldR-sfGFP.3TAG 163727 Synthetic 3484..3493 Fwd
pJH721_pJH_LldR_PlldR-sfGFP.20TAG 163729 Synthetic 3484..3493 Fwd
pJH726_pJH_LldR_PlldR-sfGFP.15TAG 163730 Synthetic 3484..3493 Fwd
pJH727_pJH_LldR_PlldR-sfGFP.10TAG 163731 Synthetic 3484..3493 Fwd
pJH774_pJH_LldR_PlldR-sfGFP.1opal 163733 Synthetic 3484..3493 Fwd
pJH775_pJH_LldR_PlldR-sfGFP.2opal 163734 Synthetic 3484..3493 Fwd
pJH776_pJH_LldR_PlldR-sfGFP.3opal 163735 Synthetic 3484..3493 Fwd
pJH805_pJH_LldR_Pcon-sfGFP.0TAG 163736 Synthetic 3450..3459 Fwd
pJH806_pJH_LldR_Pcon-sfGFP.1TAG 163737 Synthetic 3450..3459 Fwd
pJH807_pJH_LldR_Pcon-sfGFP.2TAG 163738 Synthetic 3450..3459 Fwd
pJH809_pJH_LldR_Pcon-sfGFP.10TAG 163739 Synthetic 3450..3459 Fwd
pTTCC 164264 Synthetic 3911..3920 Fwd
pTTCC 164264 Synthetic 6607..6616 Fwd
ERK1C202 164647 Homo sapiens 50..59 Fwd
ERK1C82C202 164650 Homo sapiens 33..42 Fwd
pANY4 164897 Synthetic 1236..1245 Fwd
pANY4-pR18/pL18-ccdB 164899 Synthetic 1236..1245 Fwd
pBLxVi5 167516 Synthetic 7736..7745 Fwd
Prham-M.XbaI-M.EcoRI-M.SalI-p15A-aadA 170767 Synthetic 4281..4290 Fwd

DNA Sequence Variants

Sequence context may differ across plasmids due to position and neighboring features.

DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
TAAGGAGGT
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
ACCTCCTTA
DNA Sequence (9 bp)
TAAGGAGGT