sm-9xGCN4-Renilla-MS2

178009 Synthetic Bacterial Expression

Plasmid Information

Purpose
Expresses Spaghetti Monster (sm) 9xGCN4-Renilla mRNA reporter in mammalian cells
Depositor
Jeffrey Chao
Article
Gomez-Puerta et al Elife. 2022 Jun 22;11. pii: 75580. doi:
Insert
sm-9xGCN4
Available Since
Nov. 14, 2022
Availability
Available

Sequence Information

Length
10,850 bp
Topology
circular
Molecule Type
other DNA

Features

CDS 13
Label Gene Product Position Strand
AmpR bla beta-lactamase 1172..2033 Rev
DNA Sequence
ATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA
Protein Sequence
MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
GCN4_v4 GCN4 peptide optimized to improve solub… 4457..4514 Fwd
DNA Sequence
GAAGAACTTTTGAGCAAGAATTATCATCTTGAGAACGAAGTGGCTCGTCTTAAGAAA
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 4529..4586 Fwd
DNA Sequence
GAAGAACTGCTTTCAAAGAATTACCACCTGGAAAATGAGGTAGCTAGACTGAAAAAG
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 4601..4658 Fwd
DNA Sequence
GAGGAGTTGCTGAGCAAAAATTATCATTTGGAGAACGAAGTAGCACGACTAAAGAAA
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5201..5258 Fwd
DNA Sequence
GAGGAGTTACTCTCGAAAAATTATCATCTCGAAAACGAAGTGGCTCGGCTAAAAAAG
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5273..5330 Fwd
DNA Sequence
GAAGAGCTATTATCTAAAAACTACCACCTCGAAAATGAGGTGGCACGCTTAAAAAAG
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5345..5402 Fwd
DNA Sequence
GAAGAGCTACTATCCAAGAATTATCATCTTGAGAACGAGGTAGCGCGTTTGAAGAAG
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5627..5684 Fwd
DNA Sequence
GAGGAACTACTTTCAAAGAATTACCACCTCGAAAACGAAGTAGCTCGATTAAAGAAA
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5699..5756 Fwd
DNA Sequence
GAAGAATTACTGAGTAAAAATTATCATCTGGAAAATGAGGTAGCGAGACTAAAAAAG
Protein Sequence
EELLSKNYHLENEVARLKK
GCN4_v4 GCN4 peptide optimized to improve solub… 5771..5828 Fwd
DNA Sequence
GAAGAGTTGCTATCGAAAAATTATCATCTTGAGAACGAAGTTGCTAGGCTCAAAAAG
Protein Sequence
EELLSKNYHLENEVARLKK
hRluc Renilla luciferase 5861..6791 Fwd
DNA Sequence
GCTTCCAAGGTGTACGACCCCGAGCAACGCAAACGCATGATCACTGGGCCTCAGTGGTGGGCTCGCTGCAAGCAAATGAACGTGCTGGACTCCTTCATCAACTACTATGATTCCGAGAAGCACGCCGAGAACGCCGTGATTTTTCTGCATGGTAACGCTGCCTCCAGCTACCTGTGGAGGCACGTCGTGCCTCACATCGAGCCCGTGGCTAGATGCATCATCCCTGATCTGATCGGAATGGGTAAGTCCGGCAAGAGCGGGAATGGCTCATATCGCCTCCTGGATCACTACAAGTACCTCACCGCTTGGTTCGAGCTGCTGAACCTTCCAAAGAAAATCATCTTTGTGGGCCACGACTGGGGGGCTTGTCTGGCCTTTCACTACTCCTACGAGCACCAAGACAAGATCAAGGCCATCGTCCATGCTGAGAGTGTCGTGGACGTGATCGAGTCCTGGGACGAGTGGCCTGACATCGAGGAGGATATCGCCCTGATCAAGAGCGAAGAGGGCGAGAAAATGGTGCTTGAGAATAACTTCTTCGTCGAGACCATGCTCCCAAGCAAGATCATGCGGAAACTGGAGCCTGAGGAGTTCGCTGCCTACCTGGAGCCATTCAAGGAGAAGGGCGAGGTTAGACGGCCTACCCTCTCCTGGCCTCGCGAGATCCCTCTCGTTAAGGGAGGCAAGCCCGACGTCGTCCAGATTGTCCGCAACTACAACGCCTACCTTCGGGCCAGCGACGATCTGCCTAAGATGTTCATCGAGTCCGACCCTGGGTTCTTTTCCAACGCTATTGTCGAGGGAGCTAAGAAGTTCCCTAACACCGAGTTCGTGAAGGTGAAGGGCCTCCACTTCAGCCAGGAGGACGCTCCAGATGAAATGGGTAAGTACATCAAGAGCTTCGTGGAGCGCGTGCTGAAGAACGAGCAG
Protein Sequence
ASKVYDPEQRKRMITGPQWWARCKQMNVLDSFINYYDSEKHAENAVIFLHGNAASSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLNLPKKIIFVGHDWGACLAFHYSYEHQDKIKAIVHAESVVDVIESWDEWPDIEEDIALIKSEEGEKMVLENNFFVETMLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPKMFIESDPGFFSNAIVEGAKKFPNTEFVKVKGLHFSQEDAPDEMGKYIKSFVERVLKNEQ
DD destabilization domain that can be stab… 6791..7115 Fwd
DNA Sequence
ATGGGAGTGCAGGTGGAAACCATCTCCCCAGGAGACGGGCGCACCTTCCCCAAGCGCGGCCAGACCTGTGTGGTGCACTACACCGGGATGCTTGAAGATGGAAAGAAAGTCGATTCCTCCCGGGACAGAAACAAGCCCTTTAAGTTTATGCTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTGGGTCAGAGAGCCAAACTGACTATATCTCCAGATTATGCCTATGGTGCCACTGGGCACCCAGGCATCATCCCACCACATGCCACTCTCGTCTTCGATGTGGAGCTTCTAAAACCGGAA
Protein Sequence
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKPE
DD-C destabilization domain that can be stab… 6794..7118 Fwd
DNA Sequence
GGAGTGCAGGTGGAAACCATCTCCCCAGGAGACGGGCGCACCTTCCCCAAGCGCGGCCAGACCTGTGTGGTGCACTACACCGGGATGCTTGAAGATGGAAAGAAAGTCGATTCCTCCCGGGACAGAAACAAGCCCTTTAAGTTTATGCTAGGCAAGCAGGAGGTGATCCGAGGCTGGGAAGAAGGGGTTGCCCAGATGAGTGTGGGTCAGAGAGCCAAACTGACTATATCTCCAGATTATGCCTATGGTGCCACTGGGCACCCAGGCATCATCCCACCACATGCCACTCTCGTCTTCGATGTGGAGCTTCTAAAACCGGAATAA
Protein Sequence
GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKPE
intron 1
Label Gene Product Position Strand
chimeric intron 4183..4316 Fwd
DNA Sequence
GTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAAACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTACTGACATCCACTTTGCCTTTCTCTCCACAG
polyA_signal 1
Label Gene Product Position Strand
SV40 poly(A) signal 8647..8782 Fwd
DNA Sequence
GATCCAGACATGATAAGATACATTGATGAGTTTGGACAAACCAAAACTAGAATGCAGTGAAAAAAATGCCTTATTTGTGAAATTTGTGATGCTATTGCCTTATTTGTAACCATTATAAGCTGCAATAAACAAGTT
promoter 3
Label Gene Product Position Strand
lac promoter 59..90 Rev
DNA Sequence
TTTACACTTTATGCTTCCGGCTCGTATGTTG
AmpR promoter bla 2033..2138 Rev
DNA Sequence
CGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGT
T7 promoter 4360..4379 Fwd
DNA Sequence
TAATACGACTCACTATAGG
protein_bind 11
Label Gene Product Position Strand
lac operator 35..52 Fwd
DNA Sequence
TTGTTATCCGCTCACAA
CAP binding site 104..126 Fwd
DNA Sequence
ATGAGTGAGCTAACTCACATTA
FRT 3709..3757 Rev
DNA Sequence
GAAGTTCCTATTCCGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTC
tet operator tetO 3803..3822 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 3839..3858 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 3875..3894 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 3911..3930 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 3947..3966 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 3983..4002 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
tet operator tetO 4019..4038 Fwd
DNA Sequence
TCCCTATCAGTGATAGAGA
FRT3 8889..8923 Rev
DNA Sequence
GAAGTTCCTATTCTTCAAATAGTATAGGAACTTC
rep_origin 1
Label Gene Product Position Strand
ori 413..1002 Rev
DNA Sequence
TTGAGATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTTCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAA